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Designing Computational Biology Workflows with Perl
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This manual guides the instructor to combine the partial files of the virtual machine image and construct sequencer.ova file. It is accompanied by the partial files of the virtual machine image.

Subject:
Computer Science
Computer, Networking and Telecommunications Systems
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Date Added:
04/11/2023
Designing Computational Biology Workflows with Perl
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CC BY-NC-SA
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This material introduces the AWS console interface, describes how to create an instance on AWS with the VMI provided, connect to that machine instance using the SSH protocol. Once connected, it requires the students to write a script to enter the data folder, which includes gene-sequencing input files and print the first five line of each file remotely. The same exercise can be applied if the VMI is installed on a local machine using virtualization software (e.g. Oracle VirtualBox). In this case, the Terminal program of the VMI can be used to do the exercise.

Subject:
Computer Science
Computer, Networking and Telecommunications Systems
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Date Added:
04/11/2023
"Designing Computational Biology Workflows with Perl Part 2
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CC BY-NC-SA
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This material briefly reintroduces the DNA double Helix structure, explains SNP and INDEL mutations in genes and describes FASTA, FASTQ, BAM and VCF file formats. It also explains the index creation, alignment, sorting, marking duplicates and variant calling steps of a simple preprocessing workflow and how to write a Perl script to automate the execution of these steps on a Virtual Machine Image.

Subject:
Computer Science
Computer, Networking and Telecommunications Systems
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Date Added:
04/11/2023
Designing Computational Biology Workflows with Perl Part 2b
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CC BY-NC-SA
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This material introduces the AWS console interface, describes how to create an instance on AWS with the VMI provided and connect to that machine instance using the SSH protocol. Once connected, it requires the students to write a script to automate the tasks to create VCF files from two different sample genomes belonging to E.coli microorganisms by using the FASTA and FASTQ files in the input folder of the virtual machine. The same exercise can be applied if the VMI is installed on a local machine using virtualization software (e.g. Oracle VirtualBox). In this case, the Terminal program of the VMI can be used to do the exercise.

Subject:
Computer Science
Computer, Networking and Telecommunications Systems
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Date Added:
04/11/2023
Designing Handoffs Lesson
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CC BY
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In courses and programs with community-sponsored or industry-sponsored projects, the handoff between the design team and the sponsoring partner is a particularly vulnerable transition. Innovations with the potential for impact fail shortly after the handoff for myriad reasons, including: inadequate resource allocation (time, money, skills); no clear institutional champion; inadequate institutional will to see the concept through further trial, iteration, and growth; and more. What might it look like to design the handoff? This lesson prompts design students (high school through graduate school) to begin a design project within a design project: to empathize with the handoff’s stakeholders; to define the handoff’s key needs and opportunities; to ideate novel handoff artifacts, strategies, and processes; to prototype improvements to their intended handoff strategy; and to test these strategies before the class or program ends so they can make adjustments and improvements.

Subject:
Applied Science
Architecture and Design
Material Type:
Activity/Lab
Lecture Notes
Lesson Plan
Provider:
Dartmouth College
Author:
Anthony Fosu
Ava Ori
Nitya Agarwala
Rafe Steinhauer
Date Added:
05/11/2023
Deterministic cellular automata
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CC BY-SA
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In this deterministic cellular automata model, interactions between neighboring automata are described using a prisoner's dilemma. Limiting dispersal of seeds of annual plants can permit heterogeneous co-existence, whereas thorough mixing instead allows one subpopulation to dominate quickly.

Subject:
Ecology
Life Science
Mathematics
Material Type:
Lecture Notes
Provider:
Look At Physics
Provider Set:
A Mathematical Way to Think About Biology
Date Added:
10/08/2012
Dew Point
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Educational Use
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Determine the dew point temperature for your classroom through a hands-on experiment. Use humidity and temperature probes to investigate the temperature at which it would rain in your classroom! Learn about water density and the conditions necessary to produce fog or rain.

Subject:
Atmospheric Science
Earth and Space Science
Mathematics
Physical Science
Physics
Material Type:
Activity/Lab
Diagram/Illustration
Lecture Notes
Provider:
Concord Consortium
Provider Set:
Concord Consortium Collection
Date Added:
12/13/2011
Differentiation
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CC BY-SA
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In the five parts of this video, we define the derivative and then build a cribsheet of rules for expressing the slopes of simple functions and combinations of functions. These include the power rule, the chain rule, the product and quotient rules, and the rules for differentiating sinusoidal functions.

Subject:
Mathematics
Material Type:
Lecture Notes
Provider:
Look At Physics
Provider Set:
A Mathematical Way to Think About Biology
Date Added:
10/08/2012
Diffusion, Osmosis and Active Transport
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Educational Use
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Movement of ions in and out of cells is crucial to maintaining homeostasis within the body and ensuring that biological functions run properly. The natural movement of molecules due to collisions is called diffusion. Several factors affect diffusion rate: concentration, surface area, and molecular pumps. This activity demonstrates diffusion, osmosis, and active transport through 12 interactive models.

Subject:
Life Science
Physical Science
Physics
Material Type:
Data Set
Lecture Notes
Simulation
Provider:
Concord Consortium
Provider Set:
Concord Consortium Collection
Date Added:
01/13/2012
Dollar$ or Cent$
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Some Rights Reserved
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It is common in the real world to see mathematical examples where the cents sign was used when the dollar sign was supposed to be used. Converting and comparing decimals and fractions can help clear up this misconception. Two real coupons clipped from a Sunday paper coupon section are included in this activity. This resource is from PUMAS - Practical Uses of Math and Science - a collection of brief examples created by scientists and engineers showing how math and science topics taught in K-12 classes have real world applications.

Subject:
Mathematics
Material Type:
Lecture Notes
Provider:
NASA
Provider Set:
NASA Wavelength
Date Added:
05/02/2023
Dream Job
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This math problem demonstrates the concept of geometric progression, through an example of a million dollar contract between an employee and an employer. Application of the concept of geometric progression to social cause activism is addressed. This resource is from PUMAS - Practical Uses of Math and Science - a collection of brief examples created by scientists and engineers showing how math and science topics taught in K-12 classes have real world applications.

Subject:
Mathematics
Material Type:
Lecture Notes
Provider:
NASA
Provider Set:
NASA Wavelength
Date Added:
05/02/2023
E- Content Development.pptx
Unrestricted Use
CC BY
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E-Content is very important in the present scenario.
It will be helpful to the teachers and students for a better understanding of the subject matter.
Every teacher must use e-content package for their subject matter in order to provide multi media experiences to the learner

E-content is the package of data in electronic digital format.
It is a form of knowledge or content which is packed in an electronic form.
It includes text, video, audio, graphics, animation etc.,
An innovative application of computer in the field of the teaching learning process is called e-content.
It is the advancement of technology to design, deliver, administer, select and extend learning.

Subject:
Computer Science
Computer, Networking and Telecommunications Systems
Material Type:
Lecture Notes
Date Added:
04/11/2023
ELEC-1125 - Electric Line & Smart Grid Design
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Educational Use
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This two credit course offeredat Macomb Community College explains how sensors, communications technologies, computational ability, control, and feedback mechanisms can be effectively combined to create a continually adjusting smart grid system. It provides an understanding of both Intelligrid architecture and EnergyPort, as well as how to integrate intelligent systems to achieve the goals of reliability, cost containment, energy efficiency in power production and delivery, and end-use energy efficiency. Included educational materials for this course are presentations, reports, and a syllabus. Homework assignments and exams are not included. The course outline is as follows: review of right triangles, wooden poles, pole loading, what is the Smart Grid?, electric energy efficiency in power production and delivery, electric end use efficiency, using a Smart Grid to evolve the perfect power system, intelliGrid architecture for the Smart Grid, the dynamic energy system concept, and Smart Grid EnergyPort.

Subject:
Automotive Technology and Repair
Skilled Trades and Services
Material Type:
Full Course
Lecture Notes
Lesson Plan
Provider:
Center for Automotive Technology - Macomb
Provider Set:
Center for Advanced Automotive Technology
Author:
Macomb Community College
Date Added:
09/17/2012
ELEC-2913 - Motors & Controls for Electric Vehicles & Industrial Applications
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Educational Use
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This three credit course offeredat Macomb Community Collegeprovides an introduction toalternating current (AC)motors, AC motor controls, and AC motor applications tobattery electric and hybrid electric vehicles (BEVs and HEVs). Course topics include fundamental concepts of electricity and magnetism, AC motors, traction motors, AC synchronous permanent magnet motors, HEV/BEV energy storage and control systems, adjustable frequency drives, and modeling of various components associated with electric drivevehicles in MatLab and Simulink software. Included educational materials for this course are a syllabus and PowerPoint presentations. Homework assignments and exams are not included. This course is required as a part of MCC's Electric VehicleDevelopmentTechnology Certificate and the course outline is as follows: introduction to single-phase motors, motor operation theory, basic motor controls, introduction to three phase motors, three-phase motor controls, theory of operation for adjustable frequency drives, configuring drive parameters, simulation of parameters using MatLab software, and simulation of electric vehicle parameters using Simulink software.

Subject:
Automotive Technology and Repair
Skilled Trades and Services
Material Type:
Full Course
Lecture Notes
Lesson Plan
Provider:
Center for Automotive Technology - Macomb
Provider Set:
Center for Advanced Automotive Technology
Author:
Macomb Community College
Date Added:
09/23/2012
ETT 4150 - Fundamentals of Hybrid and Electric Vehicles
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Educational Use
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This resource contains presentations from a three credit course offered at Wayne State University focused on the following hybrid electricand electric vehicle (HEV/EV) technologies: concepts and design, energy analysis, unified model approach, hybridization, hybrid powertrain architectures, internal combustion engines for HEVs, transmissions used in HEVs, and on-board energy storage. At WSU, ET 3450 (Applied Calculus and Differential Equations) and PHY 2140 (General Physics) are prerequisites to this course. The presentation titles are: 1. Introduction of Hybrid Electric Vehicles and Plugin Hybrid Electric Vehicles (HEV/PHEV), 2. Overview of Vehicle Road Load, 3. Hybrid Powertrain Configurations, 4. Vehicle Electrification, 5. Hybrid Powertrain Components, 6. Overview of Electrically Variable Transmissions (EVT), 7. Electric Machines, 8. Power Electronics Pt. 1, 9. Power Electronics Pt. 2, 10. On-Board Energy Storage, Battery Cell Management, State Estimation, Cell Balancing, and Charging Schemes, 11. Battery Management Systems (BMS), 12. Fundamentals of Regenerative Braking, 13. Modeling and Simulation Software for Vehicle System and Driveline Analysis, and 14. HEV/PHEV/EV Future Trends.

Subject:
Automotive Technology and Repair
Skilled Trades and Services
Material Type:
Lecture Notes
Provider:
Center for Automotive Technology - Macomb
Provider Set:
Center for Advanced Automotive Technology
Author:
Wayne State University
Date Added:
10/02/2012
Educational Software
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CC BY-NC-SA
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MAIN AIMS OF THE MODULE: To achieve an understanding and practical experience of key principles, methods and theories in the area of educational software.
LEARNING OUTCOMES FOR THE MODULE: The module provides opportunities for students to develop and demonstrate knowledge and understanding, qualities, skills and other attributes in the following areas:
1) Obtain understand of major learning principles, theories, and approaches
2. Identify key factors of successful educational software design and deployment.
3) Apply theories, principles, and approached into an appropriate design of educational software system.
4) Establish an appreciation of state-of-art developments in the area of educational software design.
MAIN TOPICS OF STUDY: The main topics of study considered in light of the above learning outcomes are: ‰ Educational Principles Design of educational software such as electronic instruction manuals, serious gaming, VR training, drills, and tutor agents and tutorials ‰Educational software for specific learners such as children, elderly, mentally or physically challenged individuals ‰CEvaluation of education software.

Subject:
Computer Science
Computer, Networking and Telecommunications Systems
Material Type:
Assessment
Homework/Assignment
Lecture
Lecture Notes
Lesson Plan
Reading
Provider:
Delft University of Technology
Provider Set:
Delft University OpenCourseWare
Date Added:
04/11/2023
Electric Vehicles 101
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Educational Use
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This presentation was developed by a member of MIT's electric vehicle team and provides a basic overview of electric and hybrid electric vehicle (EV and HEV) history, operation, challenges, and advantages. Discussed is EV/HEV history dating from 1830- 2010, the operation of EV/HEV systems (networking and sourcing of power throughout components), challenges (ranges, energy equivalence, consumer acceptance, charge time, grid integration, and cost), advantages (energy efficiency, fuel cost, and emissions), meeting challenges (convenient charging and improving technology), EV/HEV vehicles today (Chevrolet Volt, Tesla Roadster, and Fisker Karma), and MIT's electric vehicle team (projects, awards, and competitions). For more info on the MIT team visit http://web.mit.edu/evt/.

Subject:
Automotive Technology and Repair
Skilled Trades and Services
Material Type:
Lecture Notes
Provider:
Center for Automotive Technology - Macomb
Provider Set:
Center for Advanced Automotive Technology
Author:
Massachusetts Institute of Technology
Date Added:
11/13/2009
Electrons in Atoms and Molecules
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Educational Use
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The interactions of electrons with matter have great explanatory power and are central to many technologies from transistors, diodes, smoke detectors, and dosemeters to sophisticated imaging, lasers, and quantum computing. A conceptual grasp of the interactions of electrons in general allows students to acquire deeper understanding that can be applied to a very broad range of technologies.

Subject:
Chemistry
Physical Science
Physics
Material Type:
Activity/Lab
Data Set
Lecture Notes
Provider:
Concord Consortium
Provider Set:
Concord Consortium Collection
Date Added:
12/11/2011
Electrostatics
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Educational Use
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Use a series of interactive models and games to explore electrostatics. Learn about the effects positive and negative charges have on one another, and investigate these effects further through games. Learn about Coulomb's law and the concept that both the distance between the charges and the difference in the charges affect the strength of the force. Explore polarization at an atomic level, and learn how a material that does not hold any net charge can be attracted to a charged object. Students will be able to:

Subject:
Chemistry
Education
Physical Science
Physics
Material Type:
Activity/Lab
Data Set
Game
Lecture Notes
Provider:
Concord Consortium
Provider Set:
Concord Consortium Collection
Date Added:
12/13/2011
Elementary Ergonomics
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CC BY-NC-SA
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Elementary Ergonomics is an introduction to basic physical ergonomics theory and practice for students of other - than Industrial Design Engineering of Delft University of Technology - institutes for higher learning, such as Dutch universities, universities of EU and non-EU countries, and universities of applied sciences. The course consists of the following topics: anthropometry (1D, 2D, 3D including digital human modelling), biomechanics, and comfort.

Furthermore, the role of user involvement in the design process (evaluation of existing products and environments and of created concepts, models and prototypes) will be explained. Moreover, the meaning and representation of use cues in product design will be highlighted.

Subject:
Applied Science
Architecture and Design
Material Type:
Homework/Assignment
Lecture
Lecture Notes
Reading
Provider:
Delft University of Technology
Provider Set:
Delft University OpenCourseWare
Author:
ir M.C. Dekker
Date Added:
02/26/2016